Contigs Built with Fingerprints, Markers, and FPC V4.7
نویسندگان
چکیده
منابع مشابه
Contigs built with fingerprints, markers, and FPC V4.7.
Contigs have been assembled, and over 2800 clones selected for sequencing for human chromosomes 9, 10 and 13. Using the FPC (FingerPrinted Contig) software, the contigs are assembled with markers and complete digest fingerprints, and the contigs are ordered and localised by a global framework. Publicly available resources have been used, such as, the 1998 International Gene Map for the framewor...
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SUMMARY One of the more common uses of the program FingerPrint Contigs (FPC) is to assemble random restriction digest 'fingerprints' of overlapping genomic clones into contigs. To improve the rate of assembling contigs from large fingerprint databases we have adapted FPC so that it can be run in parallel on multiple processors and servers. The current version of 'parallelized FPC' has been used...
متن کاملFPC: a system for building contigs from restriction fingerprinted clones
MOTIVATION To meet the demands of large-scale sequencing, thousands of clones must be fingerprinted and assembled into contigs. To determine the order of clones, a typical experiment is to digest the clones with one or more restriction enzymes and measure the resulting fragments. The probability of two clones overlapping is based on the similarity of their fragments. A contig contains two or mo...
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The paper is aimed at efficient mass query optimization of substructure search on a large organic chemical database. Optimization method is based on so called fingerprints—compact bit arrays which represent graph structure in a packed form. Fingerprints allow cheap (but not complete) screening of fault cases, avoiding the subgraph isomorphism algorithm most of the time. Fingerprints, originally...
متن کاملWeb Tools for Rice , Maize , and Distribution 1
Many clone-based physical maps have been built with the FingerPrinted Contig (FPC) software, which is written in C and runs locally for fast and flexible analysis. If the maps were viewable only from FPC, they would not be as useful to the whole community since FPC must be installed on the user machine and the database downloaded. Hence, we have created a set of Web tools so users can easily vi...
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ژورنال
عنوان ژورنال: Genome Research
سال: 2000
ISSN: 1088-9051
DOI: 10.1101/gr.gr-1375r